Causal Structure

💡 Tip: Click the  + in the first column to expand detailed method descriptions.

	Method	Year	Task	Model	Published	Code
	AVICI	2022	Causal Structure	Amortized pre-trainingVariational Inference	✓	GitHub
	Bicycle	2023	Causal Structure	Graph interventionsOrnstein-Uhlenbeck processSteady-State ODE	✓	GitHub
	CausCell	2024	Multi-component DisentanglementCausal StructureCombinatorial Effect PredictionContext TransferSeen Perturbation Prediction	DiffusionAuxilary Classifiers	✓	GitHub
	CIV	2023	Causal Structure	Active LearningStructural Causal ModelDAG-Bayesian linear regression	✓	✗
	DAG-GNN	2019	Causal Structure	Continuous optimisation for acyclicityGNN	✓	GitHub
	DCD-FG	2022	Causal Structure	Factor ModelDAGsLatent DAGs	✓	GitHub
	DCDI	2020	Causal Structure	Graph interventionsDNNNormalizing-Flows	✓	GitHub
	DCI	2021	Causal Structure	PC Algorithm	✓	GitHub
	Dictys	2023	GRN InferenceCausal Structure	Ornstein–Uhlenbeck processSteady-State ODE	✓	GitHub
	discrepancy-VAE	2023	Multi-component DisentanglementSeen Perturbation PredictionCombinatorial Effect PredictionCausal Structure	VAEDisentanglement via Virtual Counterfactuals	✓	GitHub
	FLeCS	2025	Context TransferGRN InferenceCausal Structure	ODEOptimal Transport	✗	GitHub
	GSFA	2024	Multi-component DisentanglementCausal StructureLinear Gene Programmes	Factor AnalysisProbabilistic	✓	GitHub
	NODAGS-Flow	2023	Causal Structure	Graph interventionsDNNResidual Flow\nSteady-State ODE	✓	GitHub
	NOTEARS-MLP	2020	Causal Structure	Continuous optimisation for acyclicityDNN	✓	GitHub
	NOTEARS	2018	Causal Structure	Continuous optimisation for acyclicity	✓	GitHub
	RENGE	2023	Context TransferGRN InferenceCausal Structure	Regression model	✓	GitHub
	RiTINI	2024	GRN InferenceCausal StructureContext Transfer	Graph interventionsGraph-ODE	✓	GitHub
	SAMS-VAE	2023	Multi-component DisentanglementCausal StructureSeen Perturbation PredictionCombinatorial Effect Prediction	VAENB likelihoodConditional Latent EmbeddingsAddative ShiftSparse Mechanism Shift	✓	GitHub
	scCausalVI	2025	Causal StructureUnsupervised DisentanglementSeen Perturbation PredictionContext TransferMulti-component DisentanglementPerturbation ResponsivenessDifferential Analysis	Variational AutoencoderStructural Causal Model	✓	GitHub
	SCCVAE	2025	Unseen Perturbation PredictionCausal Structure	VAEVariational InferenceLatent Causal Structure	✗	GitHub
	SEA	2024	Causal Structure	Amortized pre-trainingTransfomerGraph Attention	✓	GitHub
	SENA	2024	Causal StructureMulti-component DisentanglementSeen Perturbation PredictionCombinatorial Effect Prediction	Discrepancy-VAE architectureVAEPK Representations	✓	GitHub
	svae-ligr	2024	Seen Perturbation PredictionContext TransferMulti-component DisentanglementCausal Structure	VAENB likelihoodSparse Mechanism ShiftGenerative/Experience Replay	✓	GitHub
	sVAE+	2023	Seen Perturbation PredictionMulti-component DisentanglementCausal StructureNonlinear Gene Programmes	VAENB likelihoodSparse Mechanism Shift	✓	GitHub