Perturbation Responsiveness#
đź’ˇ Tip: Click the + in the first column to expand detailed method descriptions.
| Method | Year | Task | Model | Published | Code | |
|---|---|---|---|---|---|---|
| AUGUR | 2020 | Perturbation ResponsivenessDifferential Analysis |
Random Forrest |
âś“ | GitHub | |
| CellOT | 2023 | Trace Cell PopulationsPerturbation ResponsivenessContext Transfer |
Dual (min-max) Formulation OT |
âś“ | GitHub | |
| CINEMA-OT | 2023 | Trace Cell PopulationsPerturbation ResponsivenessUnsupervised Disentanglement |
Unbalanced OTEntropy-regularized SinkhornICA |
âś“ | GitHub | |
| ContrastiveVI+ | 2024 | Perturbation ResponsivenessContrastive DisentanglementNonlinear Gene Programmes |
ZINB LikelihoodVAEContrastive |
âś“ | GitHub | |
| MELD(-VCF) | 2021 | Perturbation Responsiveness |
Manifold LearningVertex-frequency analysisGraph Diffusion |
âś“ | GitHub | |
| Mixscale | 2025 | Differential AnalysisPerturbation Responsiveness |
Gaussian Mixture ModelWeighted multivariate regression |
âś“ | GitHub | |
| Mixscape | 2021 | Perturbation ResponsivenessLinear Gene Programmes |
Gaussian Mixture ModelLDA |
âś“ | GitHub | |
| MUSIC | 2019 | Perturbation ResponsivenessLinear Gene Programmes |
Topic Model |
âś“ | GitHub | |
| Perturbation Score | 2025 | Perturbation ResponsivenessDifferential Analysis |
Robust Rank AggregateRidge RegressionRegularised Linear Models |
âś“ | GitHub | |
| SC-VAE | 2024 | Contrastive DisentanglementPerturbation Responsiveness |
VAENB likelihood |
âś“ | âś— | |
| scCausalVI | 2025 | Causal StructureUnsupervised DisentanglementSeen Perturbation PredictionContext TransferMulti-component DisentanglementPerturbation ResponsivenessDifferential Analysis |
Variational AutoencoderStructural Causal Model |
âś“ | GitHub | |
| scDIST | 2024 | Perturbation ResponsivenessDifferential Analysis |
Generalised Linear Model |
âś“ | GitHub | |
| SCEPTRE | 2021 | Differential AnalysisPerturbation Responsiveness |
Conditional ResamplingGeneralised Linear ModelNB Likelihood |
âś“ | GitHub | |
| scRANK | 2024 | Linear Gene ProgrammesPerturbation ResponsivenessGRN Inference |
PC RegressionTensor Decomposition (PARAFAC)Network Diffusion |
âś“ | GitHub | |
| Taichi | 2024 | Perturbation ResponsivenessDifferential Analysis |
Graph DiffusionK-meansLogistic RegressionSpatially-informed |
âś— | GitHub | |
| Vespucci | 2024 | Perturbation ResponsivenessDifferential Analysis |
Random ForrestSpatially-Informed |
âś— | GitHub |