Differential Analysis#
đź’ˇ Tip: Click the + in the first column to expand detailed method descriptions.
| Method | Year | Task | Model | Published | Code | |
|---|---|---|---|---|---|---|
| AUGUR | 2020 | Perturbation ResponsivenessDifferential Analysis |
Random Forrest |
âś“ | GitHub | |
| CellDrift | 2022 | Differential Analysis |
Generalised Linear ModelNB LikelihoodFunctional PCAFuzzy ClusteringTime-resolvedPerturbation-Covariate Interactions |
âś“ | GitHub | |
| LEMUR | 2025 | Seen Perturbation PredictionDifferential Analysis |
Multi-condition PCA |
âś“ | GitHub | |
| Memento | 2024 | Differential AnalysisLinear Gene ProgrammesFeature Relationships |
Hypergeometric testProbabilistic |
âś“ | GitHub | |
| MiloDE | 2024 | Differential Analysis |
Generalised Linear ModelNB Likelihood |
âś“ | GitHub | |
| Mixscale | 2025 | Differential AnalysisPerturbation Responsiveness |
Gaussian Mixture ModelWeighted multivariate regression |
âś“ | GitHub | |
| Perturbation Score | 2025 | Perturbation ResponsivenessDifferential Analysis |
Robust Rank AggregateRidge RegressionRegularised Linear Models |
âś“ | GitHub | |
| River | 2024 | Differential Analysis |
Non-linear ClassifierFeature AttributionSpatially-informed |
âś— | GitHub | |
| scCausalVI | 2025 | Causal StructureUnsupervised DisentanglementSeen Perturbation PredictionContext TransferMulti-component DisentanglementPerturbation ResponsivenessDifferential Analysis |
Variational AutoencoderStructural Causal Model |
âś“ | GitHub | |
| scDIST | 2024 | Perturbation ResponsivenessDifferential Analysis |
Generalised Linear Model |
âś“ | GitHub | |
| SCEPTRE | 2021 | Differential AnalysisPerturbation Responsiveness |
Conditional ResamplingGeneralised Linear ModelNB Likelihood |
âś“ | GitHub | |
| scMAGeCK | 2020 | Differential Analysis |
Robust Rank AggregateRidge Regression |
âś“ | GitHub | |
| Taichi | 2024 | Perturbation ResponsivenessDifferential Analysis |
Graph DiffusionK-meansLogistic RegressionSpatially-informed |
âś— | GitHub | |
| Vespucci | 2024 | Perturbation ResponsivenessDifferential Analysis |
Random ForrestSpatially-Informed |
âś— | GitHub |